We use several DNA techniques in our laboratory and work with several Internet and stand-alone programs for the analysis of DNA data. In this page, we have compiled some of the URLs that we find useful:

• NCBI, National Center for Biotechnology Information
• International Nucleotide Sequence Database Collaboration
• GenBank
• EMBL, European Molecular Biology Laboratory
• DDBJ, DNA Data Bank of Japan
• Comprehensive Microbial Resource
• PATRIC
• Maq: Mapping and Assembly with Qualities

Downloadable computer programs for DNA analysis:

• BioEdit
• MEGA, Molecular Evolutionary Genetics Analysis

Reverse and Compliment:

• Version 1
• Version 2
• Version 3
• Version 4

• BLAST, Basic Local Alignment Search Tool
• ClustalW, Multiple Sequence Alignment
• MultAlign
• DIALIGN
• ACT, The Artemis Comparison Tool
• GenColors
• BugView: A Browser for Comparing Genomes
• CGAS: Comparative genomic analysis server
• VISTA, Tools for Comparative Genomics
• UCSC Genomic Browser
• The Integrated Microbial Genome System
• Mulan, Sequence Alignment to Predict Functional Elements